The Sargasso Sea
245K sequences
7700 HMMs
5 hours
"
LDhmmer is working well on our cluster and multiple TIGR researchers
have mentioned to me that they have noticed marked improvement in the
speed of their HMM searches.
A large search for the Sargasso Sea
*
Venter, J.C., Remington, K., Heidelberg, J.F., Halpern, A.L., Rusch, D., Eisen, J.A., Wu, D., Paulsen, I., Nelson, K.E., Nelson, W., Fouts, D.E., Levy, S., Knap, A.H., Lomas, M.W., Nealson, K., White, O., Peterson, J., Hoffman, J., Parsons, R., Baden-Tillson, H., Pfannkoch, C., Rogers, Y.H. and Smith, H.O. (2004). Environmental Genome Shotgun Sequencing of the Sargasso Sea. Science
2004 Apr 2;304(5667):66-74.
Fast.