Logical Depth software accelerates searches by an order of magnitude on standard hardware.
Our profile Hidden Markov Model and Smith-Waterman sequence analysis software delivers the best price/performance on Pentium 3, Pentium 4, Opteron, or Athlon64 processors.
LDhmmer
LDhmmer consists of LDhmmsearch and LDhmmpfam,
our accelerated replacements for the computationally expensive HMMER
programs hmmsearch and hmmpfam.
Aligner
Aligner is an optimized Smith-Waterman implementation
for fast, accurate sequence similarity searches.
Read our white paper:
Fast.