Logical Depth software accelerates searches by an order of magnitude on standard hardware.
Our profile Hidden Markov Model and Smith-Waterman sequence analysis software delivers the best price/performance on Pentium 3, Pentium 4, Opteron, or Athlon64 processors.
LDhmmer consists of LDhmmsearch and LDhmmpfam, our accelerated replacements for the computationally expensive HMMER programs hmmsearch and hmmpfam.
Aligner is an optimized Smith-Waterman implementation for fast, accurate sequence similarity searches.
Read our white paper:
The Sargasso Sea